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Prediction of Stunting Among Under-5 Children in Rwanda Using Machine Learning Techniques
Similien Ndagijimana, Ignace Habimana Kabano, Emmanuel Masabo, Jean Marie Ntaganda
J Prev Med Public Health. 2023;56(1):41-49.   Published online January 6, 2023
DOI: https://doi.org/10.3961/jpmph.22.388
  • 13,088 View
  • 610 Download
  • 21 Web of Science
  • 25 Crossref
AbstractAbstract PDF
Objectives
Rwanda reported a stunting rate of 33% in 2020, decreasing from 38% in 2015; however, stunting remains an issue. Globally, child deaths from malnutrition stand at 45%. The best options for the early detection and treatment of stunting should be made a community policy priority, and health services remain an issue. Hence, this research aimed to develop a model for predicting stunting in Rwandan children.
Methods
The Rwanda Demographic and Health Survey 2019-2020 was used as secondary data. Stratified 10-fold cross-validation was used, and different machine learning classifiers were trained to predict stunting status. The prediction models were compared using different metrics, and the best model was chosen.
Results
The best model was developed with the gradient boosting classifier algorithm, with a training accuracy of 80.49% based on the performance indicators of several models. Based on a confusion matrix, the test accuracy, sensitivity, specificity, and F1 were calculated, yielding the model’s ability to classify stunting cases correctly at 79.33%, identify stunted children accurately at 72.51%, and categorize non-stunted children correctly at 94.49%, with an area under the curve of 0.89. The model found that the mother’s height, television, the child’s age, province, mother’s education, birth weight, and childbirth size were the most important predictors of stunting status.
Conclusions
Therefore, machine-learning techniques may be used in Rwanda to construct an accurate model that can detect the early stages of stunting and offer the best predictive attributes to help prevent and control stunting in under five Rwandan children.
Summary

Citations

Citations to this article as recorded by  
  • Machine learning techniques to model child low height-for-age in the Northern Province of Rwanda: The role of climatological and environmental factors and their interactions
    A. Ndagijimana, G. Nduwayezu, T. Lind, A. Mansourian
    Clinical Epidemiology and Global Health.2026; 37: 102284.     CrossRef
  • Predicting severe stunting and its determinants among under-five in Eastern African Countries: A machine learning algorithms
    Halid Worku Jemil, Sonia Worku Semayneh, Altaseb Beyene Kassaw, Kassahun Dessie Gashu, Olutosin Ademola Otekunrin
    PLOS One.2026; 21(1): e0340221.     CrossRef
  • Systems biology insights into the molecular drivers of childhood stunting and implications for intervention
    Genevieve Dable-Tupas, Ariane Blanch A. Maraon, Lorraine Joy L. Bernolo, Nelly Grace F. Toñacao, April Dawn M. Taylaran, Maria Angelica C. Plata, Jason C. Alcano, Richelle D. Björvang, Shamsul Mohd Zain, Vladimer Kobayashi, Melkamu Berhane Arefayine, Alem
    Frontiers in Nutrition.2026;[Epub]     CrossRef
  • The effect of Ogapudake digital education on mothers knowledge of stunting prevention
    Rotua Suriany Simamora, Yonathan Tri Atmodjo Reubun, Lina Indrawati, Tri Dharma Putra, Feronika Evma Rahayu, Rahmalia Putri Khayla, Muhammad Lutfi Fajri Agustian, Aliyah Zahra
    Multidisciplinary Reviews.2026; 9(9): 2026429.     CrossRef
  • Prediction of stunting and its socioeconomic determinants among adolescent girls in Ethiopia using machine learning algorithms
    Alemu Birara Zemariam, Biruk Beletew Abate, Addis Wondmagegn Alamaw, Eyob shitie Lake, Gizachew Yilak, Mulat Ayele, Befkad Derese Tilahun, Habtamu Setegn Ngusie, Oluwafemi Samson Balogun
    PLOS ONE.2025; 20(1): e0316452.     CrossRef
  • Predicting stunting status among under-5 children in Rwanda using neural network model: Evidence from 2020 Rwanda demographic and health survey
    Similien Ndagijimana, Ignace Kabano, Emmanuel Masabo, Jean Marie Ntaganda
    F1000Research.2025; 13: 128.     CrossRef
  • A deep learning approach for classifying and predicting children's nutritional status in Ethiopia using LSTM-FC neural networks
    Getnet Bogale Begashaw, Temesgen Zewotir, Haile Mekonnen Fenta
    BioData Mining.2025;[Epub]     CrossRef
  • Social and economic predictors of under-five stunting in Mexico: a comprehensive approach through the XGB model
    Brian Fogarty, Angélica García-Martínez, Nitesh V Chawla, Edson Serván-Mori
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    Albert Ndagijimana, Kristina Elfving, Aline Umubyeyi, Torbjörn Lind
    BMC Public Health.2025;[Epub]     CrossRef
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    Bhagyajyothi Rao, Muhammad Rashid, Md Gulzarull Hasan, Girish Thunga
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    Raphael Ndahimana, Melissa Uwase, Roger Muragire, Alliance Uwase, Edith Uwamahoro, Bwiza Flavia, Elysee Niyonganyira, Ayinkamiye Esperance, Divine Umutesi Rusa, Marie Josée Mwiseneza, Absolomon Gashaija, Godfrey Ngabonziza, Japhet Ishimwe, Binayisa Gad, C
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    Girmaw Abebe Tadesse, Laura Ferguson, Caleb Robinson, Shiphrah Kuria, Herbert Wanyonyi, Samuel Murage, Samuel Mburu, Rahul Dodhia, Juan M. Lavista Ferres, Bistra Dilkina, Yitagesu Habtu Aweke
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  • The accuracy of a novel stunting risk detection application based on nutrition and sanitation indicators in children aged under five years
    Tria Astika Endah Permatasari, Yudi Chadirin, Ernirita Ernirita, Anisa Nurul Syafitri, Devina Alifia Fadhilah
    BMC Nutrition.2025;[Epub]     CrossRef
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    Joyeuse Ukwishaka, Sekou Samadoulougou, Vincent Sezibera, Fati Kirakoya-Samadoulougou, Geneviève Lefebvre
    BMC Nutrition.2025;[Epub]     CrossRef
  • Supervised machine learning for classification and prediction of stunting among under-five Egyptian children
    Abdelaziz Hendy, Rasha Kadri Ibrahim, Sally Mohammed Farghaly Abdelaliem, Ahmed Zaher, Sameer A. Alkubati, Rabab Gad Abd El-kader, Ahmed Hendy
    BMC Pediatrics.2025;[Epub]     CrossRef
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    S. Shruthi, Priya Govindarajan, S. R. Shalini, Pavan John Antony, A. N. Uma, Lalith Rangarajan
    Frontiers in Public Health.2025;[Epub]     CrossRef
  • Development and Validation of a Predictive Model for Individual Risk Prediction of Stunting in Ethiopia: A Predictive Modeling Study
    Ahmed Fentaw Ahmed, Tewodros Yosef, Cherugeta Kebede Asfaw, Eyob Girum Weldeyes, Eskindir Melese Cherinet, Mohamed Abdu Oumer, Filimon Getaneh Assefa, Tinsae Tesfaw Tadege, Biniyam Mequanent Sileshi, Eyob Getaneh Yimer, Fuad Seid Ebrahim, Bemnet Yazew Abe
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  • Data science and artificial intelligence for maternal, newborn and child health: scoping review and thematic analysis
    Joseph Akuze, Grieven P. Otieno, Samson Yohannes Amare, Bancy Ngatia, Phillip Wanduru, Fati Kirakoya-Samadoulougou, Rornald Muhumuza Kananura, Agbessi Amouzou, Abiy Seifu Estifanos, Eric O. Ohuma
    BMC Public Health.2025;[Epub]     CrossRef
  • Exploring the multifactorial predictors of stunting in children under five: A systematic review of the literature, 2015–2024
    Heti Ira Ayue, Nurdiana Nurdiana, Viera Wardhani, Ani Budi Astuti, Heri Prayitno, Agung Dwi Laksono, Tonny Sundjaya
    Journal of Public Health Research.2025;[Epub]     CrossRef
  • Predicting stunting in Rwanda using artificial neural networks: a demographic health survey 2020 analysis
    Similien Ndagijimana, Ignace Kabano, Emmanuel Masabo, Jean Marie Ntaganda
    F1000Research.2024; 13: 128.     CrossRef
  • Development of a diagnostic predictive model for determining child stunting in Malawi: a comparative analysis of variable selection approaches
    Jonathan Mkungudza, Halima S. Twabi, Samuel O. M. Manda
    BMC Medical Research Methodology.2024;[Epub]     CrossRef
  • Predicting harmful alcohol use prevalence in Sub-Saharan Africa between 2015 and 2019: Evidence from population-based HIV impact assessment
    Mtumbi Goma, Wingston Felix Ng’ambi, Cosmas Zyambo, Yimam Getaneh Misganie
    PLOS ONE.2024; 19(10): e0301735.     CrossRef
  • Hybrid Machine Learning for Stunting Prevalence: A Novel Comprehensive Approach to Its Classification, Prediction, and Clustering Optimization in Aceh, Indonesia
    Novia Hasdyna, Rozzi Kesuma Dinata, Rahmi, T. Irfan Fajri
    Informatics.2024; 11(4): 89.     CrossRef
  • Türkiye'de E-Ticaretin Kullanılma Durumunun Makine Öğrenmesi İle Sınıflandırılması ve Çeşitli Değişkenlerle İlişkilerinin Analizi
    Yunus Emre Gür, Kamil Abdullah Eşidir, Cem Ayden
    Karadeniz Sosyal Bilimler Dergisi.2024; 16(31): 582.     CrossRef
  • Child stunting prevalence determination at sector level in Rwanda using small area estimation
    Innocent Ngaruye, Joseph Nzabanita, François Niragire, Theogene Rizinde, Joseph Nkurunziza, Jean Bosco Ndikubwimana, Charles Ruranga, Ignace Kabano, Dieudonne N. Muhoza, Jeanine Ahishakiye
    BMC Nutrition.2023;[Epub]     CrossRef
The Effect of the Physical Factors of Parents and Children on Stunting at Birth Among Newborns in Indonesia
Kencana Sari, Ratu Ayu Dewi Sartika
J Prev Med Public Health. 2021;54(5):309-316.   Published online August 29, 2021
DOI: https://doi.org/10.3961/jpmph.21.120
  • 14,918 View
  • 681 Download
  • 17 Web of Science
  • 28 Crossref
AbstractAbstract PDF
Objectives
This study examined stunting at birth and its associations with physical factors of parents and children in Indonesia.
Methods
This study analyzed secondary data from the national cross-sectional Indonesian Basic Health Survey 2018, conducted across 34 provinces and 514 districts/cities. Birth length data were available for 756 newborns. Univariable, bivariable, and multivariable logistic regression analyses were performed to determine associations between the physical factors of parents and children and stunting at birth.
Results
In total, 10.2% of children aged 0 months were stunted at birth (10.7% of males and 9.5% of females). Stunting at birth was associated with the mother’s age at first pregnancy, parity, parents’ heights, parents’ ages, and gestational age. Children from mothers with short statures (height <145.0 cm) and fathers with short statures (height <161.9 cm) had an almost 6 times higher likelihood of being stunted at birth (adjusted odds ratio, 5.93; 95% confidence interval, 5.53 to 6.36). A higher maternal age at first pregnancy had a protective effect against stunting. However, other variables (firstborn child, preterm birth, and both parents’ ages being <20 or >35 years) corresponded to a 2-fold higher likelihood of stunting at birth compared to the reference.
Conclusions
These findings provide evidence that interventions to reduce stunting aimed at pregnant females should also consider the parents’ stature, age, and parity, particularly if it is the first pregnancy and if the parents are short in stature or young. Robust programs to support pregnant females and monitor children’s heights from birth will help prevent intergenerational stunting.
Summary

Citations

Citations to this article as recorded by  
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